sim: Make clock private and access using clockPeriod()

sim: Make clock private and access using clockPeriod()

This patch makes the clock member private to the ClockedObject and
forces all children to access it using clockPeriod(). This makes it
impossible to inadvertently change the clock, and also makes it easier
to transition to a situation where the clock is derived from e.g. a
clock domain, or through a multiplier.